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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20871039_20871417_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20871039 - 20871417
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAACAT
5'SS Class:
major
3'SS Sequence:
TGAATTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTTCTGAATT
Flanking Amino Acid:
LPVDHVVTQEVLRDLRLLRD
Intron Amino Acid Position:
1620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
66.7
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.1
0.65
0.9
73.2
41.7
Minor 5ss
39.1
-1.2
3.2
56
48.1
Minor BPS
65.1
0.55
1.4
75.82
41.6

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781