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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20872105_20872288_F

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20872105 - 20872288
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGCAATA
5'SS Class:
weak_major
3'SS Sequence:
GTCTTTGTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAG
U12 Branch Point Sequence:
TCCCCAAGAATT
Flanking Amino Acid:
KLHADIQTLLCLIYLVPKSP
Intron Amino Acid Position:
1849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.2
57.3
41.5
Major BPS
48.9
-0
1.5
56.1
37.3
Major PPT
71.7
0.49
1.1
67.8
42.5
Minor 5ss
43.8
-0.7
3.3
62.9
43
Minor BPS
43.9
-0.3
1.9
60.59
42.8

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781