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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20872341_20873002_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20872341 - 20873002
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAATATAC
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTCTTTATGAGA
Flanking Amino Acid:
KSPVERNLKSSSSLEDWTHI
Intron Amino Acid Position:
1866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.1
59.7
33.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
40.9
-1
3.1
56.7
42
Minor BPS
45
-0.4
1.8
54.79
38.3

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781