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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20878099_20878671_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20878099 - 20878671
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAGGTGGA
5'SS Class:
major
3'SS Sequence:
TTCATTTGACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTCCTTCATT
Flanking Amino Acid:
EVLMRKKLDPSGTLKTALLD
Intron Amino Acid Position:
2107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
57.4
42.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.4
0.48
1
66.1
44
Minor 5ss
32.9
-2
3.5
44.6
44.5
Minor BPS
73.9
0.83
1.7
88.65
36.5

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781