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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20878841_20879543_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20878841 - 20879543
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCCCCATTT
Flanking Amino Acid:
QLKLIESQPWEESLQDVANL
Intron Amino Acid Position:
2163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.7
0.69
0.8
77.6
29.5
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
52.4
0.16
2.1
81.17
40.6

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781