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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20879633_20880155_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20879633 - 20880155
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTATTTTTACT
Flanking Amino Acid:
FIDAAESYSKDSCVRQSLRC
Intron Amino Acid Position:
2193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.5
0.53
0.9
66.9
39.2
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
65
0.55
1.6
84.12
36.5

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781