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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20880312_20880502_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20880312 - 20880502
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTCTCCCTGAAG
Flanking Amino Acid:
CIMSLPRFYQAAIVAEAYEF
Intron Amino Acid Position:
2245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
69
0.43
1
68.7
32.1
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
54
-0
1.9
64.74
43

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781