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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20880655_20881383_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20880655 - 20881383
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AAATTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTAAAT
Flanking Amino Acid:
KPSIFEEIAKKVKQHPPTDA
Intron Amino Acid Position:
2295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.1
0.56
1
71
43.4
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
53.6
0.19
2.2
82.06
39.2

Associated Gene:

Gene:
SPG11
Ensembl Gene ID:
ENSAPLG00000008622
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009035
20846784 - 20881564
34781