About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20902344_20903090_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20902344 - 20903090
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATTTTTTTACTT
Flanking Amino Acid:
DNSPQAFAYQLSNGIPIESW
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.1
0.84
0.7
86.8
25.8
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
65.6
0.57
1.5
81.14
35.2

Associated Gene:

Gene:
CTDSPL2
Ensembl Gene ID:
ENSAPLG00000007949
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008308
20901667 - 20921314
19648