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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20905426_20905520_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20905426 - 20905520
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCCATTTAATC
Flanking Amino Acid:
FLERMSQIYEIILFTASKKV
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.4
0.44
0.9
63
37.7
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
61.2
0.33
1.5
68.44
37.4

Associated Gene:

Gene:
CTDSPL2
Ensembl Gene ID:
ENSAPLG00000007949
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008308
20901667 - 20921314
19648