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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20905584_20912053_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20905584 - 20912053
Intron Length:
6470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTACTAAAGT
Flanking Amino Acid:
PVLFQDVIYQVYVRLRPFFR
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.8
0.6
0.9
73.6
36.4
Minor 5ss
36.1
-1.6
2.7
46.4
41.8
Minor BPS
59.5
0.38
2.1
84.76
41.8

Associated Gene:

Gene:
CTDSPL2
Ensembl Gene ID:
ENSAPLG00000007949
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008308
20901667 - 20921314
19648