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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20913146_20913434_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20913146 - 20913434
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTCTAAAACA
Flanking Amino Acid:
TYEEDWEVFDPYYFIKHVPP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.3
67.4
44
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
36.3
-1.6
3.3
53.8
43.7
Minor BPS
57.5
0.23
1.9
74.53
37

Associated Gene:

Gene:
CTDSPL2
Ensembl Gene ID:
ENSAPLG00000007949
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008308
20901667 - 20921314
19648