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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20914703_20915166_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20914703 - 20915166
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GAAATCTTAATT
Flanking Amino Acid:
FNFFSPANKNGTSGSDSPGQ
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.1
0.48
1
67.8
41.7
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
64.7
0.54
1.3
71.57
39

Associated Gene:

Gene:
CTDSPL2
Ensembl Gene ID:
ENSAPLG00000007949
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008308
20901667 - 20921314
19648