Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20917663_20921105_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20917663 - 20921105

Intron Length:

3443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGTGT

5'SS Class:

major

3'SS Sequence:

TTTCTGTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAG

U12 Branch Point Sequence:

TACTCAGTATCT

Flanking Amino Acid:

KKFIKGSTPKEERENPAKRS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

63.9

42.9

Major BPS

63.2

0.33

1.5

71.6

36.4

Major PPT

78.5

0.64

82.8

32.6

Minor 5ss

36.7

-1.5

3.6

48.2

Minor BPS

46.1

-0.2

2.4

70.18

46.3

Associated Gene:

Gene:

CTDSPL2

Ensembl Gene ID:

ENSAPLG00000007949

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008308

20901667 - 20921314

19648