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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20952331_20956430_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20952331 - 20956430
Intron Length:
4100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATATTTCAATT
Flanking Amino Acid:
DGDGGEEDVQDDEERDLQND
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.5
0.64
0.9
71.6
37.7
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
53.2
0.18
1.5
68.14
36.8

Associated Gene:

Gene:
CASC4
Ensembl Gene ID:
ENSAPLG00000007781
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042529
20950914 - 20972703
21790
ENSAPLT00000008101
20952254 - 20972703
20450