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Intron Name: Anas_platyrhynchos_platyrhynchos_11_20956599_20960262_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20956599 - 20960262

Intron Length:

3664

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

GCCTACTTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TCTGACTTAATC

Flanking Amino Acid:

KVGDLQKMKQSRFFDENESP

Intron Amino Acid Position:

332

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

72.5

39.9

Major BPS

78.2

0.7

77.9

32.1

Major PPT

71.3

0.48

0.9

64.5

36.1

Minor 5ss

41.3

-1

2.8

49.6

Minor BPS

0.42

1.6

70.87

Associated Gene:

Gene:

CASC4

Ensembl Gene ID:

ENSAPLG00000007781

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042529

20950914 - 20972703

21790

ENSAPLT00000008101

20952254 - 20972703

20450