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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20960437_20961846_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20960437 - 20961846
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTTCCTTATTT
Flanking Amino Acid:
EQPHAPNLAPGLHGGNDGNV
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
81.2
0.7
0.8
76.5
31.7
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
77.1
0.93
1.5
90.41
33.6

Associated Gene:

Gene:
CASC4
Ensembl Gene ID:
ENSAPLG00000007781
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042529
20950914 - 20972703
21790
ENSAPLT00000023145
20950914 - 20972703
21790
ENSAPLT00000008101
20952254 - 20972703
20450