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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20961946_20962291_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20961946 - 20962291
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTAGGAGA
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
DPAKAEDTPTALKKPLISAP
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.2
61.7
44.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
27.5
-2.6
2.8
24.3
36.7
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
CASC4
Ensembl Gene ID:
ENSAPLG00000007781
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042529
20950914 - 20972703
21790
ENSAPLT00000023145
20950914 - 20972703
21790