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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20962373_20963244_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20962373 - 20963244
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
CTTGTCTTACAG
Flanking Amino Acid:
QPSDHVVNGKEKIKPGGDAG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
69
0.47
1
69.9
32.6
Major PPT
86
0.81
0.8
79.9
32.3
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
48.2
-0.2
1.9
55.39
46.1

Associated Gene:

Gene:
CASC4
Ensembl Gene ID:
ENSAPLG00000007781
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042529
20950914 - 20972703
21790
ENSAPLT00000023145
20950914 - 20972703
21790