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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20963390_20964533_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20963390 - 20964533
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
TTTGTTCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTTATTAATT
Flanking Amino Acid:
LMDQIAREQKATQKIQASKD
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
65.9
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.5
0.71
0.9
77.7
35.5
Minor 5ss
31.1
-2.2
3.3
41.5
45.2
Minor BPS
70
0.71
1.5
84.39
36.6

Associated Gene:

Gene:
CASC4
Ensembl Gene ID:
ENSAPLG00000007781
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042529
20950914 - 20972703
21790
ENSAPLT00000023145
20950914 - 20972703
21790
ENSAPLT00000008101
20952254 - 20972703
20450