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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20964625_20965578_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20964625 - 20965578
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTAATTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GCGTTTCTAATT
Flanking Amino Acid:
TYLTRRLEYDSLQCGQQIKE
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
65.9
0.36
1.1
69.7
39.8
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
50.3
0.09
1.6
64.17
41.1

Associated Gene:

Gene:
CASC4
Ensembl Gene ID:
ENSAPLG00000007781
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023145
20950914 - 20972703
21790
ENSAPLT00000008101
20952254 - 20972703
20450
ENSAPLT00000042529
20950914 - 20972703
21790