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Intron Name: Anas_platyrhynchos_platyrhynchos_11_20965682_20966667_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20965682 - 20966667

Intron Length:

986

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTGATCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TGCTTTTTGATC

Flanking Amino Acid:

YQMADIHRLKEQLAELRQEF

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

78.6

37.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

76.3

0.59

0.9

40.6

Minor 5ss

33.5

-1.9

3.2

40.3

45.6

Minor BPS

61.3

0.34

1.2

64.91

35.4

Associated Gene:

Gene:

CASC4

Ensembl Gene ID:

ENSAPLG00000007781

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042529

20950914 - 20972703

21790

ENSAPLT00000023145

20950914 - 20972703

21790

ENSAPLT00000008101

20952254 - 20972703

20450