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Intron Name: Anas_platyrhynchos_platyrhynchos_11_20966723_20972376_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20966723 - 20972376

Intron Length:

5654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGCCG

5'SS Class:

major

3'SS Sequence:

TTCTTCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

ATTCATATAACT

Flanking Amino Acid:

GQVKQCEDSKIKLQNNISYQ

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

58.1

46.4

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

90.4

0.91

0.6

88.7

20.7

Minor 5ss

-2.3

3.4

39.4

Minor BPS

0.27

1.8

78.27

37.2

Associated Gene:

Gene:

CASC4

Ensembl Gene ID:

ENSAPLG00000007781

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042529

20950914 - 20972703

21790

ENSAPLT00000023145

20950914 - 20972703

21790

ENSAPLT00000008101

20952254 - 20972703

20450