Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20979571_20980046_F

Intron Information:

Intron Rank:

133438

Intron Class:

major

Intron Phase:

Intron Coordinates:

20979571 - 20980046

Intron Length:

476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTACGTGCA

5'SS Class:

major

3'SS Sequence:

ATAAACATCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

GATTCATAAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.1

0.45

1.3

66.1

39.9

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

61.5

0.26

56.1

43.3

Minor 5ss

33.3

-1.9

3.3

39.4

Minor BPS

57.8

0.24

1.9

70.95

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021778

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042730

20978803 - 20980372

1570