Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21059988_21062256_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21059988 - 21062256

Intron Length:

2269

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

CTGCTGTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATGAC

U12 Branch Point Sequence:

CTTTGCCTAATG

Flanking Amino Acid:

DPAALKEEITRYLVFLQIKR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.6

41.7

Major BPS

0.42

1.1

57.7

Major PPT

71.9

0.49

0.9

68.8

37.1

Minor 5ss

24.7

-2.9

28.6

43.8

Minor BPS

50.6

-0.1

2.2

63.6

44.7

Associated Gene:

Gene:

FRMD5

Ensembl Gene ID:

ENSAPLG00000007330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040068

21046214 - 21072784

26571

ENSAPLT00000007619

21058537 - 21072784

14248