Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21063480_21063975_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21063480 - 21063975

Intron Length:

496

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TCCCCTCCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGAAAT

U12 Branch Point Sequence:

TTCTTCTTTTTT

Flanking Amino Acid:

KIAEIHKSELSGQTPATSEL

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

64.9

40.7

Major BPS

58.4

0.21

1.2

38.7

Major PPT

78.7

0.65

0.7

72.7

25.4

Minor 5ss

37.1

-1.5

3.2

48.2

47.5

Minor BPS

43.2

-0.4

3.5

74.73

42.7

Associated Gene:

Gene:

FRMD5

Ensembl Gene ID:

ENSAPLG00000007330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040068

21046214 - 21072784

26571

ENSAPLT00000007619

21058537 - 21072784

14248