About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21068544_21068705_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21068544 - 21068705
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTACCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTTCTCCTACCT
Flanking Amino Acid:
LFFKGSRFRYSGRVAKEVME
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
76.4
0.59
0.8
69.8
29.8
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
49.7
0.06
2
73.51
43.3

Associated Gene:

Gene:
FRMD5
Ensembl Gene ID:
ENSAPLG00000007330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040068
21046214 - 21072784
26571
ENSAPLT00000007619
21058537 - 21072784
14248