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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21070372_21072200_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21070372 - 21072200
Intron Length:
1829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
CACCACTGAACA
Flanking Amino Acid:
GPDVGHGHAPGLESLRDSAH
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
62
0.3
1
53
34.1
Major PPT
71
0.47
0.8
61.5
29
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
48.8
-0
1.7
56.24
42.1

Associated Gene:

Gene:
FRMD5
Ensembl Gene ID:
ENSAPLG00000007330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046727
21070185 - 21073108
2924