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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21076328_21077106_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21076328 - 21077106
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CTCTTCCTATTT
Flanking Amino Acid:
SSTIAVLSTVRHNNNTGRWL
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
42.1
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
75.1
0.57
1
76.1
32.8
Minor 5ss
43.7
-0.7
2.9
56.3
47.9
Minor BPS
48.4
-0
1.9
67.42
44.2

Associated Gene:

Gene:
WDR76
Ensembl Gene ID:
ENSAPLG00000007086
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007380
21075935 - 21084313
8379