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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21078417_21078848_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21078417 - 21078848
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATTTGACC
Flanking Amino Acid:
GDVTRAIFDEICRSEEDLSS
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.8
0.83
0.7
81.8
28.9
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
65
0.45
1.5
76.39
33.3

Associated Gene:

Gene:
WDR76
Ensembl Gene ID:
ENSAPLG00000007086
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007380
21075935 - 21084313
8379