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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21080795_21080879_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21080795 - 21080879
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
TGATATTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCTTTCATAACT
Flanking Amino Acid:
DTEKHMCDMKRYQNSLNSMV
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.8
40.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71.5
0.48
0.9
63
43.7
Minor 5ss
43.3
-0.7
2.9
56.8
47.3
Minor BPS
73.2
0.81
1.6
88.42
36.6

Associated Gene:

Gene:
WDR76
Ensembl Gene ID:
ENSAPLG00000007086
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007380
21075935 - 21084313
8379