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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21080924_21081025_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21080924 - 21081025
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTACTA
5'SS Class:
major
3'SS Sequence:
TTTCAATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTCCTTTCAATT
Flanking Amino Acid:
LLATWMKISETKPNDTEKHM
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
66.2
39.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.7
0.76
0.8
77.6
35.3
Minor 5ss
41.7
-0.9
3.1
56.9
47.2
Minor BPS
57
0.3
1.5
72.72
39

Associated Gene:

Gene:
WDR76
Ensembl Gene ID:
ENSAPLG00000007086
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007380
21075935 - 21084313
8379