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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21082431_21083074_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21082431 - 21083074
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTTAATC
Flanking Amino Acid:
KFFAALKLHESAARLQKIAT
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
1
88.3
26.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
35.7
-1.6
2.6
43.1
43.8
Minor BPS
71.4
0.65
1.1
72.84
31.8

Associated Gene:

Gene:
WDR76
Ensembl Gene ID:
ENSAPLG00000007086
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007380
21075935 - 21084313
8379