About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21084118_21084211_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
21084118 - 21084211

Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTCCGTGGC

5'SS Class:
major

3'SS Sequence:
TTCATCCCCTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CGTTCAT

U12 Branch Point Sequence:
TCCCCGTTCATC

Flanking Amino Acid:
LSPLSQQREQERTPSGGAEL

Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.6
0.46
1.3
64.5
41

Major BPS
72.4
0.56
1.2
75
39.9

Major PPT
76.5
0.6
0.8
73.8
31.2

Minor 5ss
27.4
-2.6
3.1
35.8
40.8

Minor BPS
44.4
-0.4
2.4
54.77
44.1

Associated Gene:

Gene:
WDR76

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21075935 - 21084313
8379