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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21085520_21086909_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21085520 - 21086909
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
CTAAATCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTCTCTCTAAAT
Flanking Amino Acid:
SAGSQQFRPKGGYSKYRRTK
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73.2
0.52
1
65.8
40.3
Minor 5ss
46.2
-0.4
2.5
52.5
44.7
Minor BPS
62.8
0.48
1.8
81.82
39.6

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258