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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21089038_21090218_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21089038 - 21090218
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTTTTCTTAACA
Flanking Amino Acid:
AQAVLNGSLQVEFHETESAS
Intron Amino Acid Position:
1068

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.2
0.77
0.8
80.9
29.7
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
84.6
1.08
1
86.69
32.1

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258