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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21091977_21092424_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21091977 - 21092424
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TATGATTGAACT
Flanking Amino Acid:
DVTRLRRLILMEKDGNSHTR
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
75.8
0.64
1
65.8
41
Major PPT
78.8
0.65
0.9
74.8
39.5
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
55.4
0.25
1.7
75.11
41.3

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258