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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21092621_21093153_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21092621 - 21093153
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTTTTTGTAACT
Flanking Amino Acid:
KKWINQEGCQVICATIAFGM
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
77.9
0.63
0.9
70.3
41
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
63.2
0.49
2
83.79
37.4

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258