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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21093315_21094015_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21093315 - 21094015
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTTATATTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CATCTCTTATAT
Flanking Amino Acid:
CLEWIKKYHPHDSGIIYCLS
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.2
80.5
33.9
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
78.8
0.65
0.9
73.2
36
Minor 5ss
34.3
-1.8
2.8
43.1
36.9
Minor BPS
50.8
0.1
1.7
67.57
42.8

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258