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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21094123_21094853_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21094123 - 21094853
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TCTTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GATGTCTTATTT
Flanking Amino Acid:
QNQLEMLRPQVFTMSFNRHN
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
71.7
40.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
78.5
0.64
1
82.8
32.2
Minor 5ss
43.9
-0.7
2.9
59.1
45.4
Minor BPS
54.3
0.21
1.7
69.16
42.2

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258