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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21095003_21095090_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21095003 - 21095090
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAACC
5'SS Class:
major
3'SS Sequence:
TTTTTTTAACAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTTTTAACA
Flanking Amino Acid:
VIDEAHCVSQWGHDFRKDYK
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
0.9
71
32.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.3
0.48
1.1
73.5
40.2
Minor 5ss
28.6
-2.4
2.9
35.3
40.9
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258