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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21097368_21098302_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21097368 - 21098302
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAA
U12 Branch Point Sequence:
CTTACTTTAAGA
Flanking Amino Acid:
SFLTATKNQTEPLVNNPALE
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
65.9
0.4
1
57.6
39
Major PPT
69.1
0.43
0.9
62.6
38.5
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
63.1
0.41
1.7
71.49
41.1

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258