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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21099055_21100090_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21099055 - 21100090
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTTTC
5'SS Class:
major
3'SS Sequence:
CCATCTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTCATT
Flanking Amino Acid:
AKELLQQRDLRRKLLASSVT
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
73.7
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.7
0.67
0.8
76.7
31.7
Minor 5ss
44.2
-0.6
3.1
61.7
43.2
Minor BPS
51.5
0.13
1.7
71.2
40.9

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258