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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21100224_21100362_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21100224 - 21100362
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CTTTGCTGAAGT
Flanking Amino Acid:
AESDPRAEDADEGPHLEQEL
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.8
32.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
83.2
0.75
0.8
77.1
31.6
Minor 5ss
30.9
-2.2
3.3
40
46.1
Minor BPS
52.1
0.14
2.2
76.42
46.1

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258