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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21101123_21101909_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21101123 - 21101909
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGC
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGTTTCCCAACA
Flanking Amino Acid:
LDDEREEAHTATNDKSGGSQ
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
58.4
40.8
Major BPS
70.2
0.5
1
72.1
33
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
33.7
-1.9
3.8
49.7
46.9
Minor BPS
56.6
0.2
1.9
73.19
38.2

Associated Gene:

Gene:
BLM
Ensembl Gene ID:
ENSAPLG00000006878
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007160
21085181 - 21102438
17258