Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21108079_21108678_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21108079 - 21108678

Intron Length:

600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGGAGG

5'SS Class:

major

3'SS Sequence:

TTTCTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

GAATACTCACTC

Flanking Amino Acid:

NSWGPLWGMDGYFLIERGKN

Intron Amino Acid Position:

305

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

64.3

47.1

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

91.8

0.94

0.6

84.7

30.2

Minor 5ss

31.2

-2.1

3.1

31.4

42.5

Minor BPS

44.2

-0.4

1.9

50.89

39.4

Associated Gene:

Gene:

CTSH

Ensembl Gene ID:

ENSAPLG00000006722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023606

21107439 - 21115478

8040

ENSAPLT00000006982

21107439 - 21114211

6773