About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21108805_21110171_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21108805 - 21110171
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATGTAAAA
Flanking Amino Acid:
FMHYRKGVYSNPRCEHTPDK
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
51
0.03
2.2
73.42
38.3

Associated Gene:

Gene:
CTSH
Ensembl Gene ID:
ENSAPLG00000006722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006982
21107439 - 21114211
6773
ENSAPLT00000023606
21107439 - 21115478
8040