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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21111182_21112321_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21111182 - 21112321
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCCTAATTAATC
Flanking Amino Acid:
AQAFNNHGCSGGLPSQAFEY
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
54.5
0.12
1.8
64.2
41.6

Associated Gene:

Gene:
CTSH
Ensembl Gene ID:
ENSAPLG00000006722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023606
21107439 - 21115478
8040
ENSAPLT00000006982
21107439 - 21114211
6773