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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21113516_21113610_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21113516 - 21113610
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAGCT
5'SS Class:
major
3'SS Sequence:
TTTTTCATATAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATAA
Flanking Amino Acid:
EHNAGNHSFEMGLNQFSDLT
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
66.2
38
Major BPS
100
1.24
0.5
100
0
Major PPT
71.8
0.49
1.1
78
34
Minor 5ss
33.4
-1.9
3.7
48
42.1
Minor BPS
53.1
0.09
1.9
73.34
38.1

Associated Gene:

Gene:
CTSH
Ensembl Gene ID:
ENSAPLG00000006722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006982
21107439 - 21114211
6773