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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_21113717_21113868_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21113717 - 21113868
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
CGCCTCGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
GGCGCTGCCACT
Flanking Amino Acid:
EQLFKAWMLQNGRRYGPAEY
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
61.6
0.26
1.1
56.6
38.7
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
35.8
-1
2.3
48.79
44.6

Associated Gene:

Gene:
CTSH
Ensembl Gene ID:
ENSAPLG00000006722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006982
21107439 - 21114211
6773